*
!*/
!.coveragerc
!.github/ISSUE_TEMPLATE/*.md
!.github/**/*.yml
!.gitignore
!.hgignore
!.hgtags
!.sourcery.yaml
!CODE_OF_CONDUCT.md
!CONTRIBUTING.md
!LICENSE
!README.md
!changelog.d/README.md
!changelog.d/**/*.j2
!changelog.md
!doc/**/*.rst
!doc/**/*.js
doc/_build/*
!doc/Makefile
!doc/cogent3.bib
!doc/conf.py
!doc/data/*.fasta
!doc/data/*.fa
!doc/data/*.gb
!doc/data/*.gff
!doc/data/*.pk
!doc/data/*.txt
!doc/data/*.json
!doc/data/Q.mammal
!doc/data/*.phylip
!doc/data/*.dat
!doc/data/*.sqlitedb
!doc/data/*.tree
!doc/data/*.tre
!doc/data/raw.zip
!doc/data/*.tsv
!doc/data/tbp.jaspar
!doc/data/test.paml
!doc/**/*.py
!noxfile.py
!pyproject.toml
!ruff.toml
!src/**/*.py
!tests/**/*.py
!tests/data/*.pdb
!tests/data/*.fa
!tests/data/*.sff
!tests/data/*.pri
!tests/data/*.txt
!tests/data/*.gb
!tests/data/*.map
!tests/data/*.fasta
!tests/data/*.paml
!tests/data/*.tree
!tests/data/*.gff3
!tests/data/*.aln
!tests/data/*.bz2
!tests/data/*.gz
!tests/data/*.gde
!tests/data/formattest*.msf
!tests/data/*.paml
!tests/data/*.phylip
!tests/data/*.gff
!tests/data/*.nxs
!tests/data/*.tsv
!tests/data/*.log
!tests/data/*.json
!tests/data/*.psl
!tests/data/*.sff


#Ignore AI rules
.github/instructions/codacy.instructions.md
.claude/settings.local.json
working/*