Data stores – collections of data records

The scinexus package provides data store. A data store is a collection of data members of the same type (e.g. all .fasta files in a directory). Data stores allow you to apply an app or composed pipeline to many data records without writing loops.

Using data stores with cogent3

Use the open_data_store() function to open a data store and a loader app (see app types) to read member data.

Applying a pipeline to a data store

See the scinexus documentation for full details on data store types, structure, operations, locking, logging, and citations.